C.K.
Kudos to you for being concerned about vaccinations! There is a great book to read called, "What Your Doctor May Not Tell You About Children's Vaccinations" by Stephanie Cave, M.D.
That book guided my gut instinct to not vaccinate my kids on the regular schedule. We went thru 3 pediatricians before we found someone who was open to our concerns. (Dr. Paul Thomas at Westside Pediatrics, he's actually reviewed on Mamasource!) Even then, we disagreed and he did pressure me to vaccinate my 6 month old son with 2 shots...long story short, my son had a very high fever (considered normal!!) and was lethargic, unresponsive and wouldn't nurse for almost 24 hours. Needless to say, I stood my ground and didn't allow anymore vaccinations until earlier this summer when I had him get his tetnus shot (he was 19 months old) He did great that time!
I didn't vaccinate my daughter until she was 2 and then I only allowed her one shot at a time and I insisted on seperate shots (no combos like MMR or DTaP) at least a month apart. Then, instead of following up with numerous boosters, we had a blood test done to check for titers. She only needed 2 polio vaccinations, not 4 and she was protected from Pertusis after only 3 shots, not 4.
Read the book, it's very eye-opening. I wish I had a magic schedule for you, but honestly, we are winging it. Now that my kids are older (4 years and 2 years) I am more comfortable with them getting vaccinations, but I still insist on one at a time at least a month apart. Compared to their cousins, who were all vaccinated on schedule, my kids have been healthier, not a single trip to the emergency room, our only trips to the doctor have been for well-baby checks. I don't really do anything special food wise; both kids take vitamins and I limit their dairy and wheat due to allergies. If they are getting a cold or are teething I give them a naturpathic remedy called Children's Glycerite. We get it from our naturpath. It works great, I even travel with it to prevent colds.
In Oregon, the law says you can decline vaccinations based on religous belief. All you need to do is sign the paper your school will give you to document vaccinations. (they need that record for their accredidation)I signed it because my 4 year old isn't officially up to date on her vaccinations yet.
Good luck and follow your gut!