Yes. Viruses (and infections) in general seem to linger for me. I can usually tell I'm getting sick because I start to feel "tingly" and "weak" in my thigh muscles, and I can also tell I'm catching a cold and/or cold sore by a funny feeling I get in the skin below my mouth and around my jaw. (ALWAYS followed by a cold sore breakout!) And I've had shingles - that's a totally different pain (like your skin is on fire!).
I also end up with bursitis (in various locations) in my major joints. Sometimes the shoulder, sometimes the hip. Depends on what wonderful virus I get hit with. The doctor(s) haven't been too concerned with all this, and it's been going on for the last 15 years or so.